Expanded all flags into switches in Makefile include -s to --smart

Makefile

@@ -11,32 +11,33 @@ pdf: dir
 		echo $$FILE_NAME.pdf; \
 		pandoc --standalone --template $(STYLES_DIR)/$(STYLE).tex \
 			--from markdown --to context \
-			-V papersize=A4 \
-			-o $(OUT_DIR)/$$FILE_NAME.tex $$f > /dev/null; \
-		context $(OUT_DIR)/$$FILE_NAME.tex --result=$(OUT_DIR)/$$FILE_NAME.pdf > $(OUT_DIR)/context_$$FILE_NAME.log 2>&1; \
+			--variable papersize=A4 \
+			--output $(OUT_DIR)/$$FILE_NAME.tex $$f > /dev/null; \
+		context $(OUT_DIR)/$$FILE_NAME.tex \
+            --result=$(OUT_DIR)/$$FILE_NAME.pdf > $(OUT_DIR)/context_$$FILE_NAME.log 2>&1; \
 	done
 
 html: dir
 	for f in $(IN_DIR)/*.md; do \
 		FILE_NAME=`basename $$f | sed 's/.md//g'`; \
 		echo $$FILE_NAME.html; \
-		pandoc --standalone -H $(STYLES_DIR)/$(STYLE).css \
+		pandoc --standalone --include-in-header $(STYLES_DIR)/$(STYLE).css \
 			--from markdown --to html \
-			-o $(OUT_DIR)/$$FILE_NAME.html $$f; \
+			--output $(OUT_DIR)/$$FILE_NAME.html $$f; \
 	done
 
 docx: dir
 	for f in $(IN_DIR)/*.md; do \
 		FILE_NAME=`basename $$f | sed 's/.md//g'`; \
 		echo $$FILE_NAME.docx; \
-		pandoc -s -S $$f -o $(OUT_DIR)/$$FILE_NAME.docx; \
+		pandoc --standalone --smart $$f --output $(OUT_DIR)/$$FILE_NAME.docx; \
 	done
 
 rtf: dir
 	for f in $(IN_DIR)/*.md; do \
 		FILE_NAME=`basename $$f | sed 's/.md//g'`; \
 		echo $$FILE_NAME.rtf; \
-		pandoc -s -S $$f -o $(OUT_DIR)/$$FILE_NAME.rtf; \
+		pandoc --standalone --smart $$f --output $(OUT_DIR)/$$FILE_NAME.rtf; \
 	done
 
 dir: